* using log directory ‘/XYZ/ArvadosR.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-build-vignettes’
* checking for file ‘ArvadosR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ArvadosR’ version ‘2.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ArvadosR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
  Apache-2.0
Standardizable: FALSE
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘R6’ ‘XML’ ‘curl’ ‘jsonlite’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘ArvadosR/R/zzz.R’:
  .onLoad calls:
    print(paste0("Minimum R version required to run ", pkgName, " is ",     minAllowedRVersion, ". Your current version is ", toString(currentRVersion),     ". Please update R and try again."))

Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
See section ‘Good practice’ in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'ArvadosR.Rd':
  ‘https://github.com/arvados/arvados/blob/main/README.md’
  ‘https://github.com/arvados/arvados/tree/main/sdk/R’

Missing link or links in documentation object 'Collection.Rd':
  ‘https://github.com/arvados/arvados/tree/main/sdk/R’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘generateAPI’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... ERROR
Running examples in ‘ArvadosR-Ex.R’ failed
The error most likely occurred in:

> ### Name: Arvados
> ### Title: R6 Class Representing a Arvados
> ### Aliases: Arvados
> 
> ### ** Examples
> 
> 
> ## ------------------------------------------------
> ## Method `Arvados$new`
> ## ------------------------------------------------
> 
> arv <- Arvados$new(authToken = "ARVADOS_API_TOKEN", hostName = "ARVADOS_API_HOST", numRetries = 3)
> 
> ## ------------------------------------------------
> ## Method `Arvados$project_exist`
> ## ------------------------------------------------
> 
> arv$project_exist(uuid = projectUUID)
Error in filters[[length(filters) + 1]] <- list("group_class", "=", "project") : 
  object 'projectUUID' not found
Calls: <Anonymous> -> <Anonymous>
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
 OK
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 2 WARNINGs, 3 NOTEs