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Task #13300
closed
Story #13216: Write phasing imputation workflow
Write phasing workflow with beagle 4.1
Start date:
04/05/2018
Due date:
04/10/2018
% Done:
100%
Estimated time:
0.00 h (Total: 8.00 h)
Description
- Build docker image with beagle 4.1 (http://faculty.washington.edu/browning/beagle/beagle.27Jan18.7e1.jar)
- Write workflow scattering across reference panels
- Test workflow
Updated by Jiayong Li almost 7 years ago
beagle job on a single chromosome
https://workbench.su92l.arvadosapi.com/container_requests/su92l-xvhdp-85pz2tqv8a4xlm5
Updated by Jiayong Li almost 7 years ago
- Subject changed from Write phasing workflow with beagle.27Jan18.7e1 to Write phasing workflow with beagle 4.1
Updated by Jiayong Li almost 7 years ago
branch 13216-phasing-imputation-workflow, commit 3b05d11f8269bcf89c80f260a551d2db63b548db
single chromosome beagle (chr19)
https://workbench.su92l.arvadosapi.com/container_requests/su92l-xvhdp-zb7seb8e430gfmy
workflow not in single container
https://workbench.su92l.arvadosapi.com/container_requests/su92l-xvhdp-5kqltvk43tcb984
workflow in single container
https://workbench.su92l.arvadosapi.com/container_requests/su92l-xvhdp-3v5lgvkm8odwbtb
Updated by Jiayong Li almost 7 years ago
- Status changed from In Progress to Feedback
- Estimated time set to 0.00 h
Updated by Jiayong Li almost 7 years ago
- Status changed from Feedback to Resolved
This is now merged to master.
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