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Bug #509
openClean up runt variants imported by PharmGKB
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Description
The PharmGKB importing robot has managed to create several variants that show up in reports as "CETP 1" (gene='CETP', aa_pos=1, aa_from=!_, aa_to is null), and a couple with stuff like gene='SLC1A1', aa_pos=3780412, aa_from=!_, aa_to='Ala'.
mysql> select distinct fullname from variants v left join edits e on v.variant_id=e.variant_id left join eb_users on oid=edit_oid where variant_aa_from=_; +--------------------------+ | fullname | +--------------------------+ | [[PharmGKB]] Importing Robot | +--------------------------+ 1 row in set (0.10 sec)
mysql> select * from variants where variant_aa_from=_ and variant_rsid is null;
Updated by Ward Vandewege almost 14 years ago
- Project changed from 19 to GET-Evidence
- Category deleted (
GET-Evidence)
Updated by Madeleine Ball almost 14 years ago
- Priority changed from High to Normal
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