Story #4566
Updated by Tom Clegg about 10 years ago
The first page about running your own compute jobs (beyond using an existing template in Workbench) dives right into the deep end with bwa-mem and some UUIDs. http://doc.arvados.org/user/topics/running-pipeline-command-line.html Before this page we need to * introduce the relevant concepts of pipeline templates, pipeline instances, components, and jobs * mention the basic features of pipeline templates ** e.g., @output_of@ and how data gets passed from one job to another in a pipeline with @output_of@ ** how @script_parameters@ in a pipeline template relates to workbench UI, jobs, and task processes * offer a couple of different scenarios, with a summary of the appropriate way to build and invoke pipelines in each case (with links to the examples on the other tutorial pages).