Story #15996
Updated by Peter Amstutz almost 5 years ago
Find community-built best practices GATK4 variant calling CWL and/or create one from scratch Run on several PGP samples using su92l Put everything in a public project and document it thoroughly. Do some reporting (Multi-QC) and automated interpretation (CLINVAR annotation with SnpEff?) Stretch goals: Second pipeline using Deep Variant gVCF output is suitable to feed directly into the Lightning CWL for tiling. Do some reporting (Multi-QC) and automated interpretation (CLINVAR annotation with SnpEff?)