Arvados

08/31/2015

09:22 AM Arvados Bug #7170 (New): [Documentation] Various small bugs in the CLI SDK install guide

For installation of Arvados on the UMCU HPC cluster I wrote an updated version of the online info.
Notably: The R... Pjotr Prins

05/19/2015

10:53 PM Arvados Feature #5728: ssh port 2222 is blocked on many networks

The workaround is to tunnel ssh from a non-firewalled host. You can (arguably) use a Cloud instance for that. Pjotr Prins

04/24/2015

02:37 PM Arvados Bug #5814: give arv a --debug option

The title of this issue should be changed, but I can't change it. Pjotr Prins

02:30 PM Arvados Bug #5814: give arv a --debug option

Oh, sorry. After editing arv to show the exception it actually says
/gnu/store/m3syi7s4idxwkqmrppinm19hrv9nhvg7-... Pjotr Prins

02:11 PM Arvados Bug #5814 (Closed): give arv a --debug option

arv keep docker
Please install all required gems:
gem install activesupport andand curb google-api-client jso... Pjotr Prins

04/22/2015

04:22 PM Arvados Feature #5787: [Crunch] Add Crunch support to GATK Queue

Pjotr Prins wrote:
> Pjotr Prins wrote:
> > https://github.com/broadgsa/gatk/blob/master/public/gatk-queue/src/main... Pjotr Prins

03:55 PM Arvados Feature #5787: [Crunch] Add Crunch support to GATK Queue

Pjotr Prins wrote:
> https://github.com/broadgsa/gatk/blob/master/public/gatk-queue/src/main/scala/org/broadinstitut... Pjotr Prins

03:40 PM Arvados Feature #5787 (Resolved): [Crunch] Add Crunch support to GATK Queue

https://github.com/broadgsa/gatk/blob/master/public/gatk-queue/src/main/scala/org/broadinstitute/gatk/queue/engin... Pjotr Prins

04/15/2015

01:07 PM Arvados Feature #5733 (Closed): Add GNU Guix to Arvados

GNU Guix is a next generation software package manager and works well with Docker. GNU Guix is supporting an increasi... Pjotr Prins

01:00 PM Arvados Feature #5732 (Resolved): Add Docker support on the cloud shell host

On the shell host (hell.qr1hi) Docker is not installed:
pjotrprins@shell.qr1hi:~$ docker run --interactive --t... Pjotr Prins