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Feature #578
open
Improve reporting of variant/allele frequencies
Status:
Feedback
Priority:
Normal
Assigned To:
-
Target version:
-
Start date:
05/19/2011
Due date:
% Done:
100%
Estimated time:
Billable:
Estimatedhours:
Hours:
Totalhours:
Resolution:
fixed
Story points:
-
Description
Pieces:
- Current data on evidence.personalgenomes.org seems to have been imported from "all.txt" (should have used "parsed_for_getev.txt") in mball data
- Better version of parsed_for_getev.txt is available too
- Should not use sum(num)/sum(denom) because many of the same genomes are included in multiple populations (hapmap, 1000g, cgi)
- Just use local genomes, and generate a report of variants whose frequencies differ wildly from 1000genomes/hapmap?
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