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Story #12060
closed[CWL] Run from composer
Start date:
Due date:
% Done:
0%
Estimated time:
Story points:
-
Description
Goal: have arvados-cwl-runner execute CWL files from a git branch as written, avoiding the "packing" step.
Execution:
- crunch-run can mount git repositories (#8311)
- arvados-cwl-runner, running inside container, uploads file references to Keep and updates internal workflow references to maintain job reuse.
UI:
- User loads the CWL file in Composer
- Pushes a "Run" button
- Composer creates a container request
- Puts minimal input description in "workflow.json" where workbench knows to look for it
- Put real workflow at a different mount point with reference to git repo & commit
- Command line references real workflow
- Composer opens workbench page for container request in a new tab
Updated by Tom Morris over 7 years ago
- Target version set to Arvados Future Sprints
Updated by Tom Morris about 7 years ago
- Target version changed from Arvados Future Sprints to To Be Groomed
Updated by Peter Amstutz about 7 years ago
- Target version changed from To Be Groomed to 2017-12-20 Sprint
Updated by Peter Amstutz about 7 years ago
- Description updated (diff)
The cwlviewer has a scheme for permalinks to CWL files hosted in git:
https://github.com/common-workflow-language/cwlviewer/wiki/Permalinks
Updated by Peter Amstutz about 7 years ago
- Subject changed from [CWL] Run directly from git to [CWL] Run from composer
Updated by Peter Amstutz about 7 years ago
- Status changed from New to In Progress
Updated by Peter Amstutz about 7 years ago
- Status changed from In Progress to Resolved
Works, merged.
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