Bug #18285: Incorrect warning "Unknown hint http://arvados.org/cwl#RuntimeConstraints" - Arvados

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Bug #18285

closed

Status:

Resolved

Priority:

Normal

Assigned To:

Category:

CWL

Target version:

Start date:

Due date:

% Done:

Estimated time:

Story points:

Release:

Release relationship:

Auto

Description

peteramstutz@shell:~/arvados-tutorial/WGS-processing$ arvados-cwl-runner --project-uuid=pirca-j7d0g-n2fc6tjau3qa25z --no-wait cwl/w
gs-processing-wf.cwl yml/wgs-processing-wf-chr19.yml
INFO /usr/bin/arvados-cwl-runner 2.3.0rc3, arvados-python-client 2.3.0rc3, cwltool 3.1.20211020155521
INFO Resolved 'cwl/wgs-processing-wf.cwl' to 'file:///data/home/peteramstutz/arvados-tutorial/WGS-processing/cwl/wgs-processing-wf.
cwl'
INFO cwl/helper/bwamem-samtools-view.cwl:11:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gather-array-vcf.cwl:15:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-applyBSQR-with-interval.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-baserecalibrator-with-interval.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-haplotypecaller-with-interval.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-selectvariants.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/gatk-splitintervals.cwl:10:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/mark-duplicates.cwl:13:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
INFO cwl/helper/samtools-index.cwl:13:3: Unknown hint http://arvados.org/cwl#RuntimeConstraints
...

These warnings should not be printed.

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Subject changed from aoeu to Incorrect warning "Unknown hint http://arvados.org/cwl#RuntimeConstraints"
Description updated (diff)
Category set to CWL