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Bug #9781
closed
Arvados takes integer input as string
Status:
Closed
Priority:
Normal
Assigned To:
-
Category:
-
Target version:
-
Start date:
08/12/2016
Due date:
% Done:
0%
Estimated time:
Story points:
-
Description
2016-08-12_16:01:50 29rky-8i9sb-9r5ys2u7s9c1032 101190 script cwl-runner 2016-08-12_16:01:50 29rky-8i9sb-9r5ys2u7s9c1032 101190 script_version e31f6c9eb427302eb48150d431afcc962954b061 2016-08-12_16:01:50 29rky-8i9sb-9r5ys2u7s9c1032 101190 script_parameters {"output_name":"output","bams":null,"stitch_distance":12500,"genome":"31624fdc055e65a1ba45378c295a8ef1+1114/hg18_refseq.ucsc","controlbam":null,"tss":"2500","inputgff":"31624fdc055e65a1ba45378c295a8ef1+1114/HG18_MM1S_MED1.gff","inputbam":"31624fdc055e65a1ba45378c295a8ef1+1114/MM1S_MED1.hg18.bwt.sorted.bam","cwl:tool":"af3623a1ab9711770875862e9c538244+89/superenhancer.yml"}
This above error code was generated when I did input parameter 2500 for tss. Whereas for stitch_distance: 12500 was setup as default value.
The code only compiled when the *tss was setup default as 0. *
Updated by Tom Morris over 8 years ago
Thanks for the problem report and sorry to hear you're having trouble. It looks like you're using CWL. Do you have the CWL input files which fail and complete successfully that we can use to reproduce/investigate the problem?
Updated by Tom Morris about 8 years ago
- Status changed from New to Closed
Closing due to lack of feedback. Feel free to reopen if you can provide the information needed to reproduce the problem.
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