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Story #9884

closed

[Crunch2] Load test Crunch2 with large CWL workflow

Added by Tom Morris over 8 years ago. Updated over 8 years ago.

Status:
Resolved
Priority:
Normal
Assigned To:
Peter Amstutz
Category:
-
Target version:
2016-09-28 sprint
Start date:
09/23/2016
Due date:
% Done:

100%

Estimated time:
(Total: 0.00 h)
Story points:
0.5
Release:
Crunch v2
Release relationship:
Auto

Description

We only need tb05z or 9tee4 for this.

Subtasks 1 (0 open — 1 closed)

Task #10074: Run bcbio-nextgen workflow from BOSC talkResolvedPeter Amstutz09/23/2016

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 #1

Updated by Tom Morris over 8 years ago

  • Story points set to 0.5
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 #2

Updated by Ward Vandewege over 8 years ago

  • Description updated (diff)
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 #3

Updated by Tom Morris over 8 years ago

  • Target version set to Arvados Future Sprints
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 #4

Updated by Tom Morris over 8 years ago

  • Target version changed from Arvados Future Sprints to 2016-09-28 sprint
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 #5

Updated by Peter Amstutz over 8 years ago

  • Assigned To set to Peter Amstutz
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 #6

Updated by Peter Amstutz over 8 years ago

Issues:

  • Shell node not working/reachable on 9tee4?
  • Requests library out of date, arvados-cwl-runner won't run on tb05z
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 #7

Updated by Peter Amstutz over 8 years ago

  • Need to add "SbatchArguments": ["--workdir=/tmp"] to /etc/arvados/crunch-dispatch-slurm/config.json otherwise it tries to use the CWD of crunch-dispatch-slurm, which is /etc/sv/crunch-dispatch-slurm and doesn't exist on the shell nodes.
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 #8

Updated by Peter Amstutz over 8 years ago

  • Status changed from New to Resolved
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