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Bug #16297

closed

Dirent entry Expression not handled correctly according to CWL spec

Added by Stanislaw Adaszewski almost 6 years ago. Updated over 5 years ago.

Status:
Resolved
Priority:
Normal
Assigned To:
Peter Amstutz
Category:
CWL
Target version:
2020-08-12 Sprint
Story points:
-

Description

  - class: InitialWorkDirRequirement
    listing:
      - entryname: 'script.sh'
        entry: |
          ${
            return 'abc';
          }

According to the spec the script.sh should contain abc instead it contains "abc" (i.e. JSON-encoding of the return string value instead of the string itself).

Related issues 1 (0 open — 1 closed)

Blocked by Arvados - Idea #16353: 1.2 spec workResolvedPeter Amstutz07/07/2020Actions
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 #1

Updated by Stanislaw Adaszewski almost 6 years ago 

- class: InitialWorkDirRequirement
  listing:
    - entryname: 'script.sh'
      entry: |
        ${
          return 'abc';
        }
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 #2

Updated by Peter Amstutz almost 6 years ago

  • Target version set to 2020-05-20 Sprint
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 #3

Updated by Peter Amstutz almost 6 years ago

  • Target version changed from 2020-05-20 Sprint to 2020-06-03 Sprint
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 #4

Updated by Peter Amstutz almost 6 years ago

  • Target version changed from 2020-06-03 Sprint to 2020-06-17 Sprint
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 #5

Updated by Peter Amstutz almost 6 years ago

  • Target version changed from 2020-06-17 Sprint to 2020-07-01 Sprint
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 #6

Updated by Peter Amstutz almost 6 years ago

  • Assigned To set to Peter Amstutz
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 #7

Updated by Peter Amstutz almost 6 years ago

  • Category set to CWL
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 #8

Updated by Peter Amstutz over 5 years ago

  • Target version changed from 2020-07-01 Sprint to 2020-07-15
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 #9

Updated by Peter Amstutz over 5 years ago

Being fixed in upstream https://github.com/common-workflow-language/cwltool/pull/1309

Will be fixed when Arvados updates cwltool dependency.

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 #10

Updated by Peter Amstutz over 5 years ago

  • Status changed from New to In Progress
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 #11

Updated by Peter Amstutz over 5 years ago

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 #12

Updated by Peter Amstutz over 5 years ago

  • Target version changed from 2020-07-15 to 2020-08-12 Sprint
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 #13

Updated by Lucas Di Pentima over 5 years ago

  • Description updated (diff)
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 #14

Updated by Peter Amstutz over 5 years ago

  • Status changed from In Progress to Resolved
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