Task #2566
closed
Story #2039: New user sees a list of completed pipeline instances on Workbench dashboard, and can inspect the pipelines and data. (Permissions/presentation)
Make the GATK pipeline produce output
Added by Tom Clegg almost 11 years ago.
Updated almost 11 years ago.
- Status changed from New to In Progress
- Start date set to 04/09/2014
2014-04-01_07:01:27 qr1hi-8i9sb-9hnod7419iyp86h 29957 0 stderr INFO 07:02:13,914 ProgressMeter - Total runtime 2205.73 secs, 36.76 min, 0.61 hours
2014-04-01_07:01:27 qr1hi-8i9sb-9hnod7419iyp86h 29957 0 stderr INFO 07:02:13,914 MicroScheduler - 1258974 reads were filtered out during traversal out of 154989036 total (0.81%)
2014-04-01_07:01:27 qr1hi-8i9sb-9hnod7419iyp86h 29957 0 stderr INFO 07:02:13,914 MicroScheduler - -> 1258974 reads (0.81% of total) failing UnmappedReadFilter
2014-04-01_07:01:27 qr1hi-8i9sb-9hnod7419iyp86h 29957 0 stderr INFO 07:02:13,915 NSRuntimeProfile - Input time: 11.1 m (32.20%)
2014-04-01_07:01:27 qr1hi-8i9sb-9hnod7419iyp86h 29957 0 stderr INFO 07:02:13,915 NSRuntimeProfile - Map time: 20.6 m (59.99%)
2014-04-01_07:01:27 qr1hi-8i9sb-9hnod7419iyp86h 29957 0 stderr INFO 07:02:13,915 NSRuntimeProfile - Reduce time: 46.3 s ( 2.25%)
2014-04-01_07:01:27 qr1hi-8i9sb-9hnod7419iyp86h 29957 0 stderr INFO 07:02:13,915 NSRuntimeProfile - Outside time: 114.6 s ( 5.56%)
2014-04-01_07:01:28 qr1hi-8i9sb-9hnod7419iyp86h 29957 0 stderr INFO 07:02:14,530 GATKRunReport - Uploaded run statistics report to AWS S3
2014-04-01_07:01:28 qr1hi-8i9sb-9hnod7419iyp86h 29957 0 stderr srun: error: compute13: task 0: Exited with exit code 1
2014-04-01_07:01:28 qr1hi-8i9sb-9hnod7419iyp86h 29957 0 child 30035 on compute13.1 exit 1 signal 0 success=
- Status changed from In Progress to Resolved
- Remaining (hours) changed from 2.0 to 0.0
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